RNAdist documentation#
Version: 0.3.0
RNAdist is a tool suite to approximate expected distances of nucleotides on the thermodynamic ensemble of possible RNA secondary structures. It offers a simple Command line interface as well as a Python API to run algorithms such as “Boltzmann Sampling” and the one proposed in “Expected distance between terminal nucleotides of RNA secondary structures” (Clote et al. [2012]). It therefore mainly uses the C API of the ViennaRNA package (Lorenz et al. [2011])
Installation
Get Started and Install RNAdist
Tutorial
Various Tutorials on how to calculate expected distances of binding sites.
Command Line Interface
Automatically generated CLI documentation of RNAdist
Python API
Automatically generated API documentation of RNAdist