fasta_wrappers

Functions

bed_distance_wrapper(fasta, beds, md_config)	Command Line Wrapper for binding site distance calculation.
clote_ponty_from_fasta(fasta, md_config[, ...])	Calculates the clote-ponty matrix for every sequence in a fasta file
export_all(output_data, outdir)	Extracts expected distances from a pickled output file and stores them in TSV files.
export_array(array, file)
md_config_from_args(args)
pmcomp_from_fasta(fasta, md_config[, ...])	Calculates the pmcomp matrix for every sequence in a fasta file
sampled_distance_from_fasta(fasta, md_config)	Calculates the averaged distance matrix for every sequence in a fasta file using probabilistic backtracking