cpedistance

Functions

binding_site_distance(fc, binding_sites)	Calculates the expected distance between binding sites.
compute_clote(fc)	Uses a ViennaRNA fold_compound to calculate the clote-ponty matrix.
cp_expected_distance(sequence[, md])	Calculate the expected Distance Matrix using the clote-ponty algorithm.
dp_matrix_available()	Checks whether you use a ViennaRNA version that supports DP matrix access