plots

Functions

empty_figure([annotation, font_color])	Creates an empty Plotly figure with optional centered annotation text.
multi_means_and_histo(rapdorsets, ...)	Plots histograms of ANOSIM R and Distance as well as the distributions of the mean of multiple ids.
plot_barcode_plot(subdata, design[, colors, ...])	Creates a Westernblot like plot from the mean of protein intensities
plot_bars(subdata, design, x[, offset, ...])	Plots bar charts with overlaid scatter markers and quantile-based error bars for grouped protein abundance data across experimental conditions.
plot_dimension_reduction(rapdordata[, ...])	Plots a bubble plot using relative distribution change, relative fraction shift and the Mean Distance
plot_distance_and_var(rapdordata, colors[, ...])
plot_distance_histo(rapdorids, rapdordata[, ...])	Plots a histogram of the mean pairwise distances for a subset of proteins.
plot_distance_stats(rapdordata[, colors])
plot_distribution(subdata, design[, offset, ...])	Plots the distribution of proteins using mean, median, min and max values of replicates
plot_ep_vs_ep(rapdordata[, use_raw, colors, ...])
plot_heatmap(distances, design[, colors])	Plots a heatmap of the sample distances
plot_mean_distributions(rapdorids, ...[, ...])	Plots means of distributions of the ids specified.
plot_means_and_histos(rapdorids, rapdordata, ...)	Combines mean distribution plots and histograms into a single figure with subplots.
plot_protein_distributions(rapdorids, ...[, ...])	Plots a figure containing distributions of proteins using mean, median, min and max values of replicates
plot_protein_pca(rapdordata[, highlight, ...])	Plots a 2D PCA (Principal Component Analysis) scatter plot for protein data.
plot_protein_westernblots(rapdorids, ...[, ...])	Plots a figure containing a pseudo westernblot of the protein distribution.
plot_replicate_distribution(subdata, design)	Plots the distribution of protein for each replicate
plot_sample_correlation(rapdordata[, ntop, ...])	Creates a heatmap of correlations of different samples.
plot_sample_histogram(rapdordata[, method, ...])	Plots the distribution of jensen-shannon-distance/spearman R for all pairwise samples
plot_sample_pca(rapdordata, plot_dims[, ...])	Creates PCA plot of the samples of an RAPDORdata object.
plot_sum_of_intensities(rapdordata[, ...])	Plots a heatmap of summed intensities across fractions and replicates from RAPDOR data.
plot_var_histo(rapdorids, rapdordata[, ...])	Plots a histogram of a specified variability measure for a subset of proteins.
rank_plot(rapdorsets, rapdordata, colors[, ...])	Creates a bar-based rank plot to visualize the positions of RAPDOR sets within a ranked list.
update_bubble_legend(fig[, legend_start, ...])