RNAStructProbs

class RNAdist.dp.viennarna_helpers.RNAStructProbs(fc: RNA.fold_compound, array: numpy.ndarray)

Class that acts like a dictionary to store structural probabilities as a np.array

An instance of this class is returned if you use the RNAdist.dp.viennarna_helpers.RNAStructProbs.calc_struct_probs() function.

Parameters:

• fc (str) – The viennaRNA fold compound the structural probabilities belong to

• array (np.ndarray) – numpy array of shape (4, fc.length) storing structural probabilities

It is possbible to access the different structural probabilities the following way:

>>> sprobs: RNAStructProbs = calc_struct_probs(fc)
>>> sprobs["exterior"]
>>> sprobs["hairpin"]
>>> sprobs["interior"]
>>> sprobs["multiloop"]

__init__(fc: RNA.fold_compound, array: numpy.ndarray)

Methods

__init__(fc, array)