ed_sampling

Functions

non_redundant_sample_fc(fc[, nr_samples, ...])	Samples structures for a sequence non-redundantly and returns pairwise distances of nucleotides
pthreshold_sample_fc(fc[, threshold, undirected])	Samples structures for a sequence non-redundantly and returns weighted pairwise nt distances.
rna_shortest_paths(s, data)	A simple callback function that adds the shortest paths on structures to an N x N data matrix
sample(sequence, nr_samples[, md])	Samples structures for a sequence redundantly
sample_distance(sequence, nr_samples[, md])
sample_distance_ij(fc, i, j[, nr_samples])	Samples structures redundantly and returns the approximated expected distance between nucleotide i and j.
sample_fc(fc, nr_samples[, undirected])	Samples structures for a sequence and returns pairwise distances of nucleotides
sample_non_redundant(sequence, nr_samples[, md])	Samples structures for a sequence non-redundantly
sample_pthreshold(sequence[, cutoff, md])	Samples structures for a sequence non-redundantly
shortest_paths_from_struct(structure)
structure_to_network(structure)
undirected_distance(structure, data)