Index _ | A | B | C | D | E | F | M | N | P | R | S | U | V _ __init__() (RNAdist.dp.viennarna_helpers.RNAStructProbs method) (RNAdist.executables.RNAdistParser method) A add_md_parser() (in module RNAdist.executables) B bed_distance_wrapper() (in module RNAdist.fasta_wrappers) binding_site_distance() (in module RNAdist.dp.cpedistance) bpp_callback() (in module RNAdist.dp.viennarna_helpers) C calc_struct_probs() (in module RNAdist.dp.viennarna_helpers) clote_ponty_from_fasta() (in module RNAdist.fasta_wrappers) compute_clote() (in module RNAdist.dp.cpedistance) cp_expected_distance() (in module RNAdist.dp.cpedistance) cp_parser() (in module RNAdist.executables) D dp_matrix_available() (in module RNAdist.dp.cpedistance) E export_all() (in module RNAdist.fasta_wrappers) export_array() (in module RNAdist.fasta_wrappers) extract_parser() (in module RNAdist.executables) F fold_bppm() (in module RNAdist.dp.viennarna_helpers) M main() (in module RNAdist.executables) md_config_from_args() (in module RNAdist.fasta_wrappers) module RNAdist RNAdist.dp RNAdist.dp.cpedistance RNAdist.dp.pmcomp RNAdist.dp.viennarna_helpers RNAdist.executables RNAdist.fasta_wrappers RNAdist.sampling RNAdist.sampling.ed_sampling RNAdist.visualize RNAdist.visualize.visualize N non_redundant_sample_fc() (in module RNAdist.sampling.ed_sampling) P plfold_bppm() (in module RNAdist.dp.viennarna_helpers) pmcomp_dist_from_fc() (in module RNAdist.dp.pmcomp) pmcomp_distance() (in module RNAdist.dp.pmcomp) pmcomp_from_fasta() (in module RNAdist.fasta_wrappers) pthreshold_sample_fc() (in module RNAdist.sampling.ed_sampling) R rna_shortest_paths() (in module RNAdist.sampling.ed_sampling) RNAdist module RNAdist.dp module RNAdist.dp.cpedistance module RNAdist.dp.pmcomp module RNAdist.dp.viennarna_helpers module RNAdist.executables module RNAdist.fasta_wrappers module RNAdist.sampling module RNAdist.sampling.ed_sampling module RNAdist.visualize module RNAdist.visualize.visualize module rnadist_documentation_wrapper() (in module RNAdist.executables) RNAdistParser (class in RNAdist.executables) RNAStructProbs (class in RNAdist.dp.viennarna_helpers) run_visualization() (in module RNAdist.visualize.visualize) S sample() (in module RNAdist.sampling.ed_sampling) sample_distance() (in module RNAdist.sampling.ed_sampling) sample_distance_ij() (in module RNAdist.sampling.ed_sampling) sample_fc() (in module RNAdist.sampling.ed_sampling) sample_non_redundant() (in module RNAdist.sampling.ed_sampling) sample_pthreshold() (in module RNAdist.sampling.ed_sampling) sampled_distance_from_fasta() (in module RNAdist.fasta_wrappers) sampling_parser() (in module RNAdist.executables) set_md_from_config() (in module RNAdist.dp.viennarna_helpers) shortest_paths_from_struct() (in module RNAdist.sampling.ed_sampling) structure_to_network() (in module RNAdist.sampling.ed_sampling) U undirected_distance() (in module RNAdist.sampling.ed_sampling) up_split_callback() (in module RNAdist.dp.viennarna_helpers) V visualization_parser() (in module RNAdist.executables)
